Please wait a minute...
浙江大学学报(农业与生命科学版)  2021, Vol. 47 Issue (3): 325-334    DOI: 10.3785/j.issn.1008-9209.2020.09.141
园艺学     
茄子1-氨基环丙烷-1-羧酸合成酶基因的生物信息学及其响应逆境胁迫的表达分析
万发香(),王连臻,高军
淮阴工学院生命科学与食品工程学院,江苏 淮安 223003
Bioinformatics of 1-aminocyclopropane-1-carboxylic acid synthase gene from eggplant and its expression analysis in response to adversity stresses
Faxiang WAN(),Lianzhen WANG,Jun GAO
School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huai’an 223003, Jiangsu, China
 全文: PDF(10889 KB)   HTML
摘要:

基于课题组前期得到的茄子低温转录组数据,筛选到1个1-氨基环丙烷-1-羧酸(1-aminocyclopropane-1-carboxylic acid, ACC)合成酶基因SmACS。研究发现,SmACS编码的氨基酸序列与大豆ACS的同源性最高,并且含有ACC合成酶特有的7个保守结构域和11个不变的氨基酸残基。该SmACS基因位于第8号染色体上,全长 3 550 bp,编码序列长1 437 bp,含3个内含子和4个外显子,属典型的ACS基因结构。其编码的蛋白质由478个氨基酸组成,分子质量为54.03 kDa,等电点为6.48,亲水系数为-0.206,是一种定位于细胞质的不稳定的非分泌型亲水蛋白;该蛋白的主要构成元件为α-螺旋和无规则卷曲,具有保守的Aminotran_1_2结构域,含有39个磷酸化位点,其中以丝氨酸和苏氨酸为主。SmACS蛋白主要与ACC氧化酶等发生相互作用。该基因启动子中含有脱落酸、乙烯、冷胁迫、水杨酸及伤口响应等有关的顺式作用元件。实时荧光定量聚合酶链式反应(real-time fluorescent quantitative polymerase chain reaction, qRT-PCR)结果证实,SmACS基因受低温、高温、干旱和盐诱导而上调表达,其中尤以低温胁迫诱导效果最为显著。上述结果可为进一步研究茄子SmACS基因的功能奠定理论基础。

关键词: 茄子1-氨基环丙烷-1-羧酸合成酶基因生物信息学表达分析    
Abstract:

Based on the early transcriptome data of eggplant under cold stress, the 1-aminocyclopropane-1-carboxylic acid (ACC) synthase gene SmACS was selected out. It was found that the encoded amino acid sequence of SmACS had the highest homology with soybean ACS protein, and included seven conserved domains unique to ACC synthase and 11 invariant amino acid residues. The SmACS gene was located on the chromosome 8, and the full length of this gene was 3 550 bp, whose length of coding sequence (CDS) region was 1 437 bp. It contained three introns and four exons, which belonged to a typical ACS gene structure. The SmACS protein consisted of 478 amino acids, with a molecular mass of 54.03 kDa, isoelectric point of 6.48 and hydrophilic index of -0.206. It was an unstable non-secreted hydrophilic protein located in the cytoplasm. The main components of SmACS protein were α-helix and random coils. It had a conserved Aminotran_1_2 domain and contained 39 phosphorylation sites, of which serine and threonine were the main ones. The SmACS protein mainly interacted with ACC oxidase. The promoter of SmACS gene contained Cis-acting elements related to abscisic acid, ethylene, cold stress, salicylic acid and wound responses. The results of real-time fluorescent quantitative polymerase chain reaction (qRT-PCR) confirmed that the expression of SmACS gene was induced by cold, heat, drought and salt stresses, among which cold stress was the most significant. The above results lay theoretical basis for functional identification of SmACS gene from eggplant.

Key words: eggplant    1-aminocyclopropane-1-carboxylic acid synthase gene    bioinformatics    expression analysis
收稿日期: 2020-09-14 出版日期: 2021-06-25
CLC:  S 641.1  
基金资助: 江苏省淮安市科技计划(HAN201601)
通讯作者: 万发香     E-mail: wanfaxiang@hyit.edu.cn
服务  
把本文推荐给朋友
加入引用管理器
E-mail Alert
RSS
作者相关文章  
万发香
王连臻
高军

引用本文:

万发香,王连臻,高军. 茄子1-氨基环丙烷-1-羧酸合成酶基因的生物信息学及其响应逆境胁迫的表达分析[J]. 浙江大学学报(农业与生命科学版), 2021, 47(3): 325-334.

Faxiang WAN,Lianzhen WANG,Jun GAO. Bioinformatics of 1-aminocyclopropane-1-carboxylic acid synthase gene from eggplant and its expression analysis in response to adversity stresses. Journal of Zhejiang University (Agriculture and Life Sciences), 2021, 47(3): 325-334.

链接本文:

http://www.zjujournals.com/agr/CN/10.3785/j.issn.1008-9209.2020.09.141        http://www.zjujournals.com/agr/CN/Y2021/V47/I3/325

基因名称

Gene name

引物序列(5′→3′)

Primer sequence (5′→3′)

SmACSF: TGTCTTCTCCTATGGTCCAAGC
R: TGGATGTATCCATGAACGCCT
APRTF: GAGATGCATGTAGGTGCTGTGCAA
R: GGCCCTTCAATTCTGGCAACTCAA
表1  引物序列
图1  茄子SmACS蛋白的氨基酸序列与其他物种同源序列的系统发育进化树
图2  茄子SmACS蛋白与其他物种ACS蛋白序列多重比对结果红色箭头指示转氨酶中保守的氨基酸,紫色圆点指示保守谷氨酸残基与底物特异性有关,红色框表示ACS同工酶的7个保守结构域(Box1~Box7)。
图3  茄子SmACS蛋白的保守基序分析
图4  茄子SmACS基因结构分析
图5  茄子SmACS蛋白二级结构的预测结果A. SmACS蛋白二级结构柱状图;B. SmACS蛋白二级结构线型变化曲线图。蓝色:α-螺旋;红色:延伸链;绿色:β-转角;紫色:无规则卷曲。
图6  茄子SmACS蛋白三级结构的预测结果
图7  茄子SmACS蛋白的保守结构域
图8  茄子SmACS蛋白的磷酸化位点
图9  ACS1A蛋白的互作网络

位点名称

Site name

数量

Number

功能

Function

ABRE1脱落酸响应顺式作用元件 Cis-acting element involved in the abscisic acid response
circadian1光周期响应有关的顺式作用元件 Cis-acting element related to photoperiod response
ERE8乙烯响应元件 Ethylene-responsive element
MRE1MYB光反应结合位点 MYB photoreactive binding site
MYC5

脱落酸响应和冷胁迫中涉及的顺式作用元件

Cis-acting elements involved in abscisic acid response and cold stress

O2-site2玉米醇溶蛋白代谢有关的顺式作用元件 Cis-acting elements related to zein metabolism
TCA1水杨酸响应顺式作用元件 Cis-acting element involved in salicylic acid response
WUN-motif1伤口响应元件 Wound-responsive element
表2  SmACS基因启动子区域主要顺式作用元件
图10  茄子SmACS基因响应逆境胁迫的表达分析
1 TRUSOV Y, BOTELLA J R. Silencing of the ACC synthase gene ACACS2 causes delayed flowering in pineapple [Ananas comosus (L.) Merr.]. Journal of Experimental Botany, 2006,57(14):3953-3960. DOI:10.1093/jxb/erl167
doi: 10.1093/jxb/erl167
2 FRANKOWSKI K, KESY J, WOJCIECHOWSKI W, et al. Light- and IAA-regulated ACC synthase gene (PnACS) from Pharbitis nil and its possible role in IAA-mediated flower inhibition. Journal of Plant Physiology, 2009,166(2):192-202. DOI:10.1016/j.jplph.2008.02.013
doi: 10.1016/j.jplph.2008.02.013
3 TATSUKI M, HAJI T, YAMAGUCHI M. The involvement of 1-aminocyclopropane-1-carboxylic acid synthase isogene, Pp-ACS1, in peach fruit softening. Journal of Experimental Botany, 2006,57(6):1281-1289. DOI:10.1093/jxb/erj097
doi: 10.1093/jxb/erj097
4 彭贞贞,叶旗慧,徐晓艳,等.1-甲基环丙烯处理对红富士苹果贮藏品质的影响.浙江大学学报(农业与生命科学版),2020,46(1):83-92. DOI:10.3785/j.issn.1008-9209.2019.07.111
PENG Z Z, YE Q H, XU X Y, et al. Effect of 1-methylcyclopropene treatment on storage quality of red Fuji apple. Journal of Zhejiang University (Agriculture and Life Sciences), 2020,46(1):83-92. (in Chinese with English abstract)
doi: 10.3785/j.issn.1008-9209.2019.07.111
5 张翰卿,郜海燕,刘瑞玲,等.不同厚度聚乙烯袋包装对茭白采后品质和木质化的影响.浙江大学学报(农业与生命科学版),2020,46(1):55-63. DOI:10.3785/j.issn.1008-9209.2019.08.011
ZHANG H Q, GAO H Y, LIU R L, et al. Effects of packaging of polyethylene bags with different thicknesses on storage quality and lignification of water bamboo. Journal of Zhejiang University (Agriculture and Life Sciences), 2020,46(1):55-63. (in Chinese with English abstract)
doi: 10.3785/j.issn.1008-9209.2019.08.011
6 KATO M, HAYAKAWA Y, HYODO H, et al. Wound-induced ethylene synthesis and expression and formation of 1-aminocyclopropane-1-carboxylate (ACC) synthase, ACC oxidase, phenylalanine ammonia-lyase, and peroxidase in wounded mesocarp tissue of Cucurbita maxima. Plant, Cell & Physiology, 2000,41(4):440-447. DOI:10.1093/pcp/41.4.440
doi: 10.1093/pcp/41.4.440
7 KAMIYOSHIHARA Y, IWATA M, FUKAYA T, et al. Turnover of LeACS2, a wound-inducible 1-amino-cyclopropane-1-carboxylic acid synthase in tomato, is regulated by phosphorylation/dephosphorylation. The Plant Journal, 2010,64:140-150. DOI:10.1111/j.1365-313X.2010.04316.x
doi: 10.1111/j.1365-313X.2010.04316.x
8 YOUNG T E, MEELEY R B, GALLIE D R. ACC synthase expression regulates leaf performance and drought tolerance in maize. The Plant Journal, 2004,40:813-825. DOI:10.1111/j.1365-313X.2004.02255.x
doi: 10.1111/j.1365-313X.2004.02255.x
9 GE L, LIU J Z, WONG W S, et al. Identification of a novel multiple environmental factor-responsive 1-aminocyclo-propane-1-carboxylate synthase gene, NT-ACS2, from tobacco. Plant, Cell and Environment, 2000,23:1169-1182. DOI:10.1046/j.1365-3040.2000.00618.x
doi: 10.1046/j.1365-3040.2000.00618.x
10 WANG N N, SHIH M C, LI N.The GUS reporter-aided analysis of the promoter activities of Arabidopsis ACC synthase genes AtACS4, AtACS5, and AtACS7 induced by hormones and stresses. Journal of Experimental Botany, 2005,56(413):909-920. DOI:10.1093/jxb/eri083
doi: 10.1093/jxb/eri083
11 翟建盛,侯和胜.高等植物ACS基因家族及其功能研究进展.天津农业科学,2012,18(1):35-39. DOI:10.3969/j.issn.1006-6500.2012.01.009
ZHAI J S, HOU H S. A review of ACS gene family and its function in higher plant. Tianjin Agricultural Sciences, 2012,18(1):35-39. (in Chinese with English abstract)
doi: 10.3969/j.issn.1006-6500.2012.01.009
12 LIN L C, HSU J H, WANG L C. Identification of novel inhibitors of 1-aminocyclopropane-1-carboxylic acid synthase by chemical screening in Arabidopsis thaliana. Journal of Biological Chemistry, 2010,285(43):33445-33456. DOI:10.1074/jbc.M110.132498
doi: 10.1074/jbc.M110.132498
13 刘丽.高等植物ACC合成酶基因研究进展.天津农业科学,2013,19(2):22-25. DOI:10.3969/j.issn.1006-6500.2013.02.007
LIU L. Review on researching advance in ACC synthase genes in higher plants. Tianjin Agricultural Sciences, 2013,19(2):22-25. (in Chinese with English abstract)
doi: 10.3969/j.issn.1006-6500.2013.02.007
14 音建华,赖钟雄,林玉玲,等.枇杷胚性培养物中2个ACS基因的克隆及生物信息学分析.热带作物学报,2012,33(12):2214-2219. DOI:10.3969/j.issn.1000-2561.2012.12.018
YIN J H, LAI Z X, LIN Y L, et al. Cloning and bioinformatics analysis of two ACS genes from embryonic cultures in Eriobotrya japonica. Chinese Journal of Tropical Crops, 2012,33(12):2214-2219. (in Chinese with English abstract)
doi: 10.3969/j.issn.1000-2561.2012.12.018
15 徐昌杰,陈昆松,张上隆.猕猴桃ACC合成酶基因家族四个成员的克隆.农业生物技术学报,2001,9(1):55-57.
XU C J, CHEN K S, ZHANG S L. Molecular cloning of four members of ACC synthase gene family from kiwifruit (Actinidia chinensis Planch.). Journal of Agricultural Biotech-nology, 2001,9(1):55-57. (in Chinese with English abstract)
16 HUANG F C, DO Y Y, HUANG P L. Genomic organization of a diverse ACC synthase gene family in banana and expression characteristics of the gene member involved in ripening of banana fruits. Journal of Agricultural and Food Chemistry, 2006,54(11):3859. DOI:10.1021/jf060001w
doi: 10.1021/jf060001w
17 李萌.西瓜1-氨基环丙烷-1-羧酸合成酶基因及启动子的克隆与分析.河北,保定:河北农业大学,2012:19-38.
LI M. Cloning and analysis of 1-aminocyclopropane-1-carboxylate synthase gene and promoter in watermelon. Baoding, Hebei: Hebei Agricultural University, 2012:19-38. (in Chinese with English abstract)
18 初雪鹏.葡萄1-氨基环丙烷-1-羧酸合酶基因的克隆和表达分析.辽宁,大连:辽宁师范大学,2014:14-31.
CHU X P. Cloning and expression analysis of grape 1-aminocyclopropane-1-carboxylate synthase genes. Dalian, Liaoning: Liaoning Normal University, 2014:14-31. (in Chinese with English abstract)
19 HIDALGO M S P, TECSON-MENDOZA E M, LAURENA A C, et al. Hybrid ‘Sinta’ papaya exhibits unique ACC synthase 1 cDNA isoforms. Journal of Biochemistry and Molecular Biology, 2005,38(3):320-327. DOI:10.5483/bmbrep.2005.38.3.320
doi: 10.5483/bmbrep.2005.38.3.320
20 吴建阳,李彩琴,李建国.荔枝ACS1基因的分离及其与幼果脱落的关系.果树学报,2017,34(7):817-827. DOI:10.13925/j.cnki.gsxb.20160393
WU J Y, LI C Q, LI J G. Isolation of ACS1 gene and the relationship between its expression and fruitlet abscission in litchi. Journal of Fruit Science, 2017,34(7):817-827. (in Chinese with English abstract)
doi: 10.13925/j.cnki.gsxb.20160393
21 EI-SHARKAWY I, KIM W S, JAYASANKAR S, et al. Differential regulation of four members of the ACC synthase gene family in plum. Journal of Experimental Botany, 2008,59(8):2009-2027. DOI:10.1093/jxb/ern056
doi: 10.1093/jxb/ern056
22 王爱勤,杨丽涛,王自章,等.甘蔗乙烯合成酶基因家族三个成员的克隆与序列分析.热带亚热带植物学报,2005,13(6):485-492.
WANG A Q, YANG L T, WANG Z Z,et al. Cloning and sequence analysis of three members of ACC synthase gene family in sugarcane. Journal of Tropical and Subtropical Botany, 2005,13(6):485-492. (in Chinese with English abstract)
23 王爱勤,杨丽涛,王自章,等.环境胁迫和激素诱导甘蔗ACC合成酶基因家族三个成员的表达.作物学报,2006,32(5):734-737.
WANG A Q, YANG L T, WANG Z Z, et al. Expression of three members of ACC synthase gene family in sugarcane induced by hormones and environmental stress. Acta Agro-nomica Sinica, 2006,32(5):734-737. (in Chinese with English abstract)
24 王自章,李杨瑞,张树珍,等.甘蔗ACC氧化酶基因片段的克隆与序列分析.遗传学报,2003,30(1):62-69.
WANG Z Z, LI Y R, ZHANG S Z, et al. Cloning and sequencing of ACC oxidase gene from sugarcane. Acta Genetica Sinica, 2003,30(1):62-69. (in Chinese with English abstract)
25 张亚丽,乔小燕,陈亮.茶树ACC合成酶基因全长cDNA的克隆及其生物信息学分析.茶叶科学,2008,28(4):235-241.
ZHANG Y L, QIAO X Y, CHEN L. Full-length cDNA cloning and bioinformatic analysis of ACC synthase gene from the tea plant (Camellia sinensis). Journal of Tea Science, 2008,28(4):235-241. (in Chinese with English abstract)
26 周义杰,闫希焕,高亭豪,等.树莓1-氨基环丙烷-1-羧酸合酶基因(RiACS)家族成员的克隆及生物信息学分析.北京农学院学报,2019,34(3):1-9. DOI:10.13473/j.cnki.issn.1002-3186.2019.0306
ZHOU Y J, YAN X H, GAO T H, et al. Cloning and bioinformatics analysis of members of the raspberry 1-aminocyclopropane-1-carboxylate synthase gene (RiACS) family. Journal of Beijing University of Agriculture, 2019,34(3):1-9. (in Chinese with English abstract)
doi: 10.13473/j.cnki.issn.1002-3186.2019.0306
27 CHEN C, CHEN H, ZHANG Y, et al. TBtools-an integrative toolkit developed for interactive analyses of big biological data. Molecular Plant, 2020,13(8):1194-1202. DOI:10.1016/j.molp.2020.06.009
doi: 10.1016/j.molp.2020.06.009
28 高水平,魏春梅,刘改秀,等.牡丹ACS基因克隆及序列分析.河南农业科学,2013,42(3):100-102, 106. DOI:10.3969/j.issn.1004-3268.2013.03.024
GAO S P, WEI C M, LIU G X, et al. Cloning and bioinformatics analysis of gene sequence encoding ACC synthase from Paeonia suffruticosa. Journal of Henan Agricultural Sciences, 2013,42(3):100-102, 106. (in Chinese with English abstract)
doi: 10.3969/j.issn.1004-3268.2013.03.024
[1] 王尤轩,王梦雨,李煜博,陶晗,夏楚楚,黄凯美,汪俏梅. 芥蓝Aux/IAA家族基因生物信息学与表达分析[J]. 浙江大学学报(农业与生命科学版), 2021, 47(3): 314-324.
[2] 宣铃娟,程少禹,戴梦怡,王卓为,申亚梅. 紫玉兰MlSOC1基因亚细胞定位及花芽分化时期的表达分析[J]. 浙江大学学报(农业与生命科学版), 2020, 46(4): 407-416.
[3] 李倬,陈朗,姜涛,刘丽霞,张丽,王瑞,李耀东. 牦牛DQA2基因单核苷酸多态性及其生物信息学分析[J]. 浙江大学学报(农业与生命科学版), 2020, 46(3): 376-382.
[4] 张丽,农伟伦,卢建雄,张国华,刘丽霞. 八眉猪FABPs主要家族基因单核苷酸多态性筛查及生物信息学分析[J]. 浙江大学学报(农业与生命科学版), 2019, 45(1): 109-118.
[5] 张丽, 刘丽霞, 戴洪伟, 陈红, 王瑞, 岳炳辉. 静宁鸡肌肉生长抑制素基因单核苷酸多态性筛查及生物信息学分析[J]. 浙江大学学报(农业与生命科学版), 2018, 44(5): 629-637.
[6] 李戌清,张雅,田忠玲,吴根良. 茄子连作与轮作土壤养分、酶活性及微生物群落结构差异分析[J]. 浙江大学学报(农业与生命科学版), 2017, 43(5): 561-569.
[7] 马广莹,朱开元,史小华,邹清成,刘慧春,詹菁,田丹青. 红掌2个SOC1基因的克隆、序列与表达分析[J]. 浙江大学学报(农业与生命科学版), 2017, 43(3): 289-297.
[8] 沈恩惠, 刘扬, 叶楚玉, 樊龙江. 植物非编码小RNA研究进展(英文)[J]. 浙江大学学报(农业与生命科学版), 2014, 40(4): 370-378.
[9] 柯野, 曾松荣, 郑秋桦. 总状毛霉丝氨酸蛋白酶基因结构和功能的生物信息学分析[J]. 浙江大学学报(农业与生命科学版), 2012, 38(4): 370-376.
[10] 陈贝贝, 蒋明, 苗立祥, 李温平. 青花菜转录因子基因BoWRKY3的克隆与表达分析[J]. 浙江大学学报(农业与生命科学版), 2012, 38(3): 243-249.
[11] 冯雷, 张德荣, 陈双双, 冯斌, 谢传奇, 陈佑源, 何勇. 基于高光谱成像技术的茄子叶片灰霉病早期检测[J]. 浙江大学学报(农业与生命科学版), 2012, 38(3): 311-317.
[12] 王静,刘丽,张志明,赵茂俊,潘光堂. 玉米病程相关蛋白1基因的克隆与表达分析[J]. 浙江大学学报(农业与生命科学版), 2012, 38(1): 35-42.
[13] 马 云,王云云,张晓婷,李 芬,王启钊,王新庄. 鸭PPARα基因结构及功能的生物信息学分析[J]. 浙江大学学报(农业与生命科学版), 2011, 37(4): 371-379.
[14] 蒋 明,陈孝赏,李金枝. 紫菜薹花青素合成酶基因BcANS的克隆、表达与序列分析[J]. 浙江大学学报(农业与生命科学版), 2011, 37(4): 393-398.
[15] 周小东,沈富兵,郑崛村. β-苦瓜蛋白质分子结构模建研究[J]. 浙江大学学报(农业与生命科学版), 2011, 37(4): 399-406.