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浙江大学学报(农业与生命科学版)  2019, Vol. 45 Issue (6): 746-750    DOI: 10.3785/j.issn.1008-9209.2019.03.131
动物科学与动物医学     
蛋鸡5周龄体质量遗传参数及估计方法比较
郭军(),曲亮,窦套存,沈曼曼,胡玉萍,王克华()
江苏省家禽科学研究所,江苏省家禽遗传育种重点实验室,江苏 扬州 225125
Comparison of genetic parameter evaluation methods for body mass of the five-week-old layer
Jun GUO(),Liang QU,Taocun DOU,Manman SHEN,Yuping HU,Kehua WANG()
Key Laboratory for Poultry Genetics and Breeding of Jiangsu Province, Jiangsu Institute of Poultry Sciences, Yangzhou 225125, Jiangsu, China
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摘要:

为调查蛋鸡资源群体早期体质量选育潜力,比较了限制最大似然法、马尔科夫链蒙特卡洛方法和积分嵌套拉普拉斯逼近方法的效率和结果准确性,应用动物模型估计遗传参数。试验鸡来自东乡绿壳蛋鸡与白来航鸡F2资源群体,包括3个世代总计5 405只鸡,采用限制最大似然法和贝叶斯法剖分5周龄蛋鸡体质量表型方差。结果表明:蛋鸡F2资源群体5周龄体质量遗传力为0.49~0.59,具体因算法而定;马尔科夫链蒙特卡洛方法计算用时较长、准确性稍差;积分嵌套拉普拉斯逼近方法能够准确给出方差组分的标准误,而不是近似的或依据正态分布推测的;限制最大似然法计算用时短,结果准确,目前为最佳选择。由于蛋鸡资源群体5周龄蛋鸡体质量选育潜力大,将来可以通过个体选育获取遗传进展。

关键词: 贝叶斯法动物模型蛋鸡限制最大似然法遗传力    
Abstract:

This study aimed to investigate the selection potential for early body mass in a layer resource population, and to compare three inference methods based on their efficiency and accuracy, including restricted maximum likelihood method (REML), Markov chain Monte Carlo method (MCMC), and integrated nested Laplace approximations (INLA). The genetic parameters were estimated by animal models. The layers were collected from a resource population, which were set up by Dongxiang blue-shelled layers crossbred with White Leghorn layers. The total amount of layers, made up of three generations, were 5 405. The phenotypic variance was dissected with the REML and Bayesian approaches. The results showed: 1) The heritability on body mass of the five-week-old layers ranged from 0.49 to 0.59, depending on the estimation method. 2) The MCMC method seemed a slow and low accuracy for genetic evaluation. 3) The use of INLA method could calculate the standard error for variance components, without approximations or use of normality assumptions. 4) Due to the advantage of computation time and accuracy, REML remained the best practical choice for the genetic evaluation in the poultry production. Considering the abundance of genetic potential in the resource population of five-week-old layer, it is better to select on early body mass with animal model.

Key words: Bayesian approach    animal model    layer    restricted maximum likelihood method    heritability
收稿日期: 2019-03-13 出版日期: 2020-01-20
CLC:  S 831  
基金资助: 国家现代农业产业技术体系建设专项资金(CARS-40-K01);国家重点研发计划(2018YFD0501302);江苏省现代农业产业技术体系建设项目(JATS〔2019〕378);江苏省农业重大新品种创制项目(PZCZ201729)
通讯作者: 王克华     E-mail: guojun.yz@gmail.com;sqbreeding@126.com
作者简介: 郭军(https://orcid.org/0000-0001-5283-3563),E-mail:guojun.yz@gmail.com
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郭军
曲亮
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引用本文:

郭军,曲亮,窦套存,沈曼曼,胡玉萍,王克华. 蛋鸡5周龄体质量遗传参数及估计方法比较[J]. 浙江大学学报(农业与生命科学版), 2019, 45(6): 746-750.

Jun GUO,Liang QU,Taocun DOU,Manman SHEN,Yuping HU,Kehua WANG. Comparison of genetic parameter evaluation methods for body mass of the five-week-old layer. Journal of Zhejiang University (Agriculture and Life Sciences), 2019, 45(6): 746-750.

链接本文:

http://www.zjujournals.com/agr/CN/10.3785/j.issn.1008-9209.2019.03.131        http://www.zjujournals.com/agr/CN/Y2019/V45/I6/746

图1  东乡绿壳蛋鸡(DXBS)与白来航鸡(WL)资源群体5周龄体质量箱线图

算法

Algorithm

加性遗传方差

Additive

genetic variance

残差

Residual variance

遗传力

Heritability

REML0.26±0.010.26±0.010.50±0.03
MCMC0.39±0.060.28±0.050.59±0.03
INLA0.26±0.020.27±0.010.49±0.03
表1  5周龄蛋鸡体质量加性遗传方差、残差及遗传力
算法 AlgorithmINLAMCMCREML
INLA1.0000.8080.996
MCMC0.8691.0000.842
REML0.9890.8661.000
表2  REML、MCMC及INLA预测的育种值相关性分析
图2  5周龄蛋鸡体质量遗传力轨迹图和密度图
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