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浙江大学学报(农业与生命科学版)  2019, Vol. 45 Issue (5): 635-646    DOI: 10.3785/j.issn.1008-9209.2019.03.041
动物科学与动物医学     
血清4型禽腺病毒浙江株的分离鉴定及其全基因组序列分析
李夏(),夏文君,毛鍶超,卢舒婷,莫开昆,廖敏,周继勇,郑肖娟()
浙江大学动物科学学院,农业农村部动物病毒学重点实验室,杭州 310058
Isolation, identification and whole genome sequence analysis of serotype 4 fowl adenovirus Zhejiang strain
Xia LI(),Wenjun XIA,Sichao MAO,Shuting LU,Kaikun MO,Min LIAO,Jiyong ZHOU,Xiaojuan ZHENG()
Key Laboratory of Animal Virology, Ministry of Agriculture and Rural Affairs, College of Animal Sciences, Zhejiang University, Hangzhou 310058, China
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摘要:

对2015年浙江省某鸡场疑似心包积液-肝炎综合征的患病鸡进行病原检测和分离鉴定,并对分离到的禽腺病毒全基因组进行遗传进化分析。采用聚合酶链式反应(polymerase chain reaction, PCR)扩增结合核酸测序分析确定其病原为血清4型禽腺病毒(FAdV4);通过鸡胚接种和原代鸡胚肾(chicken embryo kidney, CEK)细胞多次传代培养,获得FAdV4细胞适应毒株ZJ2015。血凝实验显示:ZJ2015株不能凝集小鼠、大鼠、鸡和绵羊的红细胞,间接免疫荧光分析表明其半数组织培养感染剂量(50% tissue culture infective dose, TCID50)为2.0×106 mL-1。以 0.2 mL/枚剂量接种鸡胚,该毒株能100%致死鸡胚,且致死鸡胚胚体潮红、肝肿大、出血等。将FAdV4全基因组分11段分别进行PCR扩增和测序,获得跨越ZJ2015毒株的全基因组序列(GenBank登录号:MF521611.1),对其全基因组、hexonfiber-2基因的氨基酸进行遗传进化分析显示:ZJ2015毒株与近几年国内流行的FAdV4强毒株处于同一个分支上,同源性达到99.87%以上;与ON1、KR5、MX-SHP95等较早毒株相比,ZJ2015具有1 966 bp的大段缺失及Fiber-2蛋白上多个位点的突变。浙江毒株ZJ2015的分离可为进一步开展FAdV4的诊断防控技术和毒力变异机制的研究奠定基础。

关键词: 血清4型禽腺病毒分离鉴定全基因组测序hexon基因fiber-2基因    
Abstract:

Fowl adenovirus causing the pericardial effusion-hepatitis syndrome was identified from a chicken farm in Zhejiang Province in 2015, and its whole genome was sequenced to explore its genetic evolution. The viral nucleic acid was amplified by polymerase chain reaction (PCR) and further sequenced to confirm that the serotype 4 fowl adenovirus (FAdV4) is the main causative pathogen. A cell-adapted FAdV4 strain ZJ2015 was successfully obtained by multiple passages using chicken embryos and then primary chicken embryo kidney (CEK) cells. Hemagglutination assay revealed that the ZJ2015 strain could not agglutinate red blood cells of mice, rats, chickens and sheep, and the 50% tissue culture infective dose (TCID50) was 2.0×106 mL-1 by indirect immunofluorescent assay. The strain could kill chicken embryos at a dose of 0.2 mL causing the flushing, hepatomegaly, hemorrhage, etc. The 11 segments covering the FAdV4-ZJ2015 whole genome was amplified by PCR and further sequenced to obtain the whole genome sequences (GenBank ID: MF521611.1). Evolution analysis based on the whole genome, Hexon and Fiber-2 protein showed that the ZJ2015 strain was on the same branch as the prevailing FAdV4 strains in China, with the homology over 99.87%. Different from the earlier strains such as ON1, KR5 and MX-SHP95, the ZJ2015 strain was found to have a 1 966 bp deletion in the whole genome and multiple mutations in the Fiber-2 protein. In a word, the isolation of ZJ2015 strain from Zhejiang Province provides a basis for further studies on diagnostics and disease control, as well as the mechanism of virulence variation of FAdV4.

Key words: serotype 4 fowl adenovirus    isolation and identification    whole genomic sequencing    hexon gene    fiber-2 gene
收稿日期: 2019-03-04 出版日期: 2019-12-05
CLC:  S 855.3  
基金资助: 国家重点研发计划(2016YFD05000800);国家现代农业产业技术体系建设项目(CARS-40-K13)
通讯作者: 郑肖娟     E-mail: 1224946704@qq.com;zhengxiaojuan@zju.edu.cn
作者简介: 李夏(https://orcid.org/0000-0001-6056-1828),E-mail:1224946704@qq.com
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引用本文:

李夏,夏文君,毛鍶超,卢舒婷,莫开昆,廖敏,周继勇,郑肖娟. 血清4型禽腺病毒浙江株的分离鉴定及其全基因组序列分析[J]. 浙江大学学报(农业与生命科学版), 2019, 45(5): 635-646.

Xia LI,Wenjun XIA,Sichao MAO,Shuting LU,Kaikun MO,Min LIAO,Jiyong ZHOU,Xiaojuan ZHENG. Isolation, identification and whole genome sequence analysis of serotype 4 fowl adenovirus Zhejiang strain. Journal of Zhejiang University (Agriculture and Life Sciences), 2019, 45(5): 635-646.

链接本文:

http://www.zjujournals.com/agr/CN/10.3785/j.issn.1008-9209.2019.03.041        http://www.zjujournals.com/agr/CN/Y2019/V45/I5/635

引物名称

Primer name

引物序列(5′→3′)

Primer sequence (5′→3′)

扩增片段长度

Length of amplified fragments/bp

hexon-FCAARTTCAGRCAGACGGT900
hexon-RTAGTGATGMCGSGACATCAT
AIV-M-FTTCTAACCGAGGTCGAAAC285
AIV-M-RAAGCGTCCGCTGCAGTCC
IBDV-VP2-FACAGATTGTTCCGTTCATACG852
IBDV-VP2-RTCGAACTTGTAGTTCCCATTG
NDV-NP-FCARGATTGGGTCACAGTAGCAA700
NDV-NP-RRAGTCTCCAGAATGATGTGCTC
IBV-S1-FCCAAAGTGCCTTCAGACC210
IBV-S1-RGCTAGACCAAGCCATACC
MDV-repeat region-FTGCGATGAAAGTGCTATGGA201
MDV-repeat region-RAAGGCTTCCCGTCACTCAAA
EDSV-100 kDa-FCCATTTCTCACGCCGGAGT286
EDSV-100 kDa-RTTGTCATTCCAAGAGCCTTGC
表1  鸡常见病原的鉴别检测引物

引物名称

Primer names

引物序列(5′→3′)

Primer sequence (5′→3′)

引物位置1)

Primer position1)

扩增片段长度

Length of amplified fragments/bp

F1-FCATCATCTTATATAACCGCGTCT1~233 620
F1-RTTGGGTTGACGAAGTAAGAGCA3 599~3 620
F2-FGCGTCCTTCTTGATCCTCG3 387~3 4053 909
F2-RCGACTCCTTTCGCTGGTG7 278~7 295
F3-FGGATGCTACTCTGGCGTTGT5 859~5 8785 137
F3-RCACCTTACCGTCCGATTTCTA10 075~10 095
F4-FATGAAACGCACAAAGACGG10 705~10 7235 155
F4-RGCTGCGGGTTCAGTTTGA15 842~15 859
F5-FTCTATACGTGCTTTCGGTGGT14 383~14 4035 951
F5-RGCCCGTAGTCAGGTCTCG20 316~20 333
F6-FAACGCTGCTCCCCTTTTA18 920~18 9374 317
F6-RCCAGTTTCTGTGGTGGTTG23 218~23 236
F7-FGTGGACCATCCCGTTCAGT22 906~22 9243 632
F7-RCAGAGTCGCTAGAGTGGCTAAA26 516~26 537
F8-FCTGGTCGTCTTCTTCTTCGG25 104~25 1235 839
F8-RCGAGCACTTTGAGCACCC30 925~30 942
F9-FGCCACTAAGCAAGCCAACG30 804~30 8224 906
F9-RTGACTCATCATGGGTGTGGC35 690~35 709
F10-FACACTAACTTCCTCATTGACCCTC35 553~35 5765 580
F10-RTAGTGCCTGTCCATTTGCC41 114~41 132
F11-FGAAATGCTTCCTCCTTCACG38 750~38 7695 007
F11-RCATCATCTTATATAACCGCGTCT43 734~43 756
表2  跨越FAdV4-ZJ2015株全基因组的11个片段的扩增引物
图1  肝组织及鸡胚尿囊液中病毒核酸的鉴别检测A、B.鸡肝组织样品(M:100 bp DNA梯状标志物;1~4:4只鸡肝组织样品;P1、P2、P3:分别为病毒接种SPF鸡胚至第1、2、3代的尿囊液);C、D.尿囊液样品(M:100 bp DNA梯状标志物;1~3:分别为第1、2、3代尿囊液接种CEK细胞的上清液;4:各种检测病毒的阳性对照;5:阴性对照;此外,EDSV没有阳性对照,4、5均为阴性对照)。
图2  FAdV4-ZJ2015感染CEK细胞的间接免疫荧光检测
图3  FAdV4-ZJ2015株的鸡胚致病性实验和肝组织中Fiber-2蛋白的表达A.未感染(mock)和FAdV4-ZJ2015第7代(P7)、第11代(P11)细胞适应毒感染鸡胚的胚体(a、b)、胚体剖解(c)及其肝组织(d);B.以Fiber-2蛋白鼠多抗对未接毒(mock)及不同代次(P3/P7/P8/P9/P11)细胞毒接种鸡胚的肝组织中病毒蛋白表达的蛋白质印迹法检测。
图4  分段PCR扩增法对FAdV4-ZJ2015全基因组的扩增结果M:1 kb DNA标志物;F1~F11:跨越FAdV4基因组全长的11个PCR扩增片段。
图5  基于ZJ2015全基因组核苷酸水平的系统进化分析
表3  基于ZJ2015全基因组核苷酸水平的同源性比对

序号

No.

同源性 Percent identity/%

序号

No.

毒株

Virus strain

12345678910111213

1100.0100.0100.0100.0100.0100.0100.0100.099.098.598.398.21ZJ2015
20.0100.0100.0100.0100.0100.0100.0100.099.098.598.398.22CH/AHBZ/2015
30.00.0100.0100.0100.0100.0100.0100.099.098.598.398.23CH/JSXZ/2015
40.00.00.0100.0100.0100.0100.0100.099.098.598.398.24CH/SDDZ/2015
50.00.00.00.0100.0100.0100.0100.099.098.598.398.25CH/SXCZ/2015
60.00.00.00.00.0100.0100.0100.099.098.598.398.26HB1510
70.00.00.00.00.00.0100.0100.099.098.598.398.27HLJFAd15
80.00.00.00.00.00.00.0100.099.098.598.398.28HN151025
90.00.00.00.00.00.00.00.099.098.598.398.29JSJ13
101.01.01.01.01.01.01.01.01.098.898.998.210MX-SHP95
111.51.51.51.51.51.51.51.51.51.299.398.611KR5
121.71.71.71.71.71.71.71.71.71.10.798.412ON1
131.81.81.81.81.81.81.81.81.81.81.41.613B1-7
  
图6  基于Hexon(A)和Fiber-2(B)蛋白的氨基酸水平系统进化分析
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