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, Volume 15 Issue 11 Previous Issue    Next Issue
Articles
Simultaneous determination by UPLC-MS/MS of seven bioactive compounds in rat plasma after oral administration of Ginkgo biloba tablets: application to a pharmacokinetic study
Wen-ping Wang, Na Liu, Qian Kang, Pei-pei Du, Yi Lan, Bo-chen Zhao, Yan-yan Chen, Qing Zhang, Hui Li, Ye-wen Zhang, Qing Wu
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2014, 15(11): 929-939.   https://doi.org/10.1631/jzus.B1400035
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A rapid, reliable, and sensitive method was developed using ultra-performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS) with an electrospray ionization (ESI) source for determination of seven bioactive compounds in rat plasma after oral administration of Ginkgo biloba tablets (GBTs). The method simultaneously detects bilobalide (BB), ginkgolide A (GA), ginkgolide B (GB), ginkgolide C (GC), quercetin (QCT), kaempferol (KMF), and isorhamnetin (ISR) for pharmacokinetic study. The analytes and internal standard (IS) were extracted from rat plasma by acetidin. An MS/MS detection was conducted using multiple reaction monitoring (MRM) and operating in the negative ionization mode. The calibration curve ranges were 5–500, 5–500, 2.5–250, 1–100, 1–100, 1–100, and 1–100 ng/ml for BB, GA, GB, GC, QCT, KMF, and ISR, respectively. The mean recovery of the analytes ranged from 68.11% to 84.42%. The intra- and inter-day precisions were in the range of 2.33%–9.86% and the accuracies were between 87.67% and 108.37%. The method was used successfully in a pharmacokinetic study of GBTs. The pharmacokinetic parameters of seven compounds were analyzed using a non-compartment model. Plasma concentrations of the seven compounds were determined up to 48 h after administration, and their pharmacokinetic parameters were in agreement with previous studies.
Essential oil from Zanthoxylum bungeanum Maxim. and its main components used as transdermal penetration enhancers: a comparative study
Yi Lan, Hui Li, Yan-yan Chen, Ye-wen Zhang, Na Liu, Qing Zhang, Qing Wu
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2014, 15(11): 940-952.   https://doi.org/10.1631/jzus.B1400158
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Our previous studies had confirmed that the essential oil from Zanthoxylum bungeanum Maxim. (Z. bungeanum oil) could effectively enhance the percutaneous permeation of drug molecules as a natural transdermal penetration enhancer. The aim of the present study is to investigate and compare the skin penetration enhancement effect of Z. bungeanum oil and its main components on traditional Chinese medicine (TCM) active components. Toxicities of Z. bungeanum oil and three selected terpene compounds (terpinen-4-ol, 1,8-cineole, and limonene) in epidermal keratinocytes (HaCaT) and dermal fibroblast (CCC-ESF-1) cell lines were measured using an MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) assay. Five model drugs in TCM external preparations, namely osthole (OT), tetramethylpyrazine (TMP), ferulic acid (FA), puerarin (PR), and geniposide (GP), which were selected based on their lipophilicity denoted by logKo/w, were tested using in vitro permeation studies in which vertical Franz diffusion cells and rat abdominal skin were employed. The secondary structure changes of skin stratum corneum (SC) and drug thermodynamic activities were investigated to understand their mechanisms of action using Fourier transform infrared (FTIR) spectroscopy and saturation solubility studies, respectively. It was found that Z. bungeanum oil showed lower toxicities in both HaCaT cells and CCC-ESF-1 cells compared with three terpene compounds used alone. The enhancement permeation capacities by all tested agents were in the following increasing order: terpinen-4-ol≈1,8-cineole<limonene<Z. bungeanum oil. The mechanisms of permeation enhancement suggested that these enhancers promoted the skin permeation of drugs mainly by affecting SC lipids. These results indicated that Z. bungeanum oil exhibited better performance in enhancing the skin permeation of active components in TCM preparations.
Temporal changes in soil bacterial and archaeal communities with different fertilizers in tea orchards
Hua Wang, Shao-hui Yang, Jing-ping Yang, Ya-min Lv, Xing Zhao, Ji-liang Pang
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2014, 15(11): 953-965.   https://doi.org/10.1631/jzus.B1400114
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It is important to understand the effects of temporal changes in microbial communities in the acidic soils of tea orchards with different fertilizers. A field experiment involving organic fertilizer (OF), chemical fertilizer (CF), and unfertilized control (CK) treatments was arranged to analyze the temporal changes in the bacterial and archaeal communities at bimonthly intervals based on the 16S ribosomal RNA (rRNA) gene using terminal restriction fragment length polymorphism (T-RFLP) profiling. The abundances of total bacteria, total archaea, and selected functional genes (bacterial and archaeal amoA, bacterial narG, nirK, nirS, and nosZ) were determined by quantitative polymerase chain reaction (qPCR). The results indicate that the structures of bacterial and archaeal communities varied significantly with time and fertilization based on changes in the relative abundance of dominant T-RFs. The abundancy of the detected genes changed with time. The total bacteria, total archaea, and archaeal amoA were less abundant in July. The bacterial amoA and denitrifying genes were less abundant in September, except the nirK gene. The OF treatment increased the abundance of the observed genes, while the CF treatment had little influence on them. The soil temperature significantly affected the bacterial and archaeal community structures. The soil moisture was significantly correlated with the abundance of denitrifying genes. Of the soil chemical properties, soil organic carbon was the most important factor and was significantly correlated with the abundance of the detected genes, except the nirK gene. Overall, this study demonstrated the effects of both temporal alteration and organic fertilizer on the structures of microbial communities and the abundance of genes involved in the nitrogen cycle.
Designing a SCAR molecular marker for monitoring Trichoderma cf. harzianum in experimental communities
Gabriel Pérez, Valentina Verdejo, Clarissa Gondim-Porto, Julieta Orlando, Margarita Carú
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2014, 15(11): 966-978.   https://doi.org/10.1631/jzus.B1400063
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Several species of the fungal genus Trichoderma establish biological interactions with various micro- and macro-organisms. Some of these interactions are relevant in ecological terms and in biotechnological applications, such as biocontrol, where Trichoderma could be considered as an invasive species that colonizes a recipient community. The success of this invasion depends on multiple factors, which can be assayed using experimental communities as study models. Therefore, the aim of this work is to develop a species-specific sequence-characterized amplified region (SCAR) marker to monitor the colonization and growth of T. cf. harzianum when it invades experimental communities. For this study, 16 randomly amplified polymorphic DNA (RAPD) primers of 10-mer were used to generate polymorphic patterns, one of which generated a band present only in strains of T. cf. harzianum. This band was cloned, sequenced, and five primers of 20鈥?3 mer were designed. Primer pairs 2F2/2R2 and 2F2/2R3 successfully and specifically amplified fragments of 278 and 448 bp from the T. cf. harzianum BpT10a strain DNA, respectively. Both primer pairs were also tested against the DNA from 14 strains of T. cf. harzianum and several strains of different fungal genera as specificity controls. Only the DNA from the strains of T. cf. harzianum was successfully amplified. Moreover, primer pair 2F2/2R2 was assessed by quantitative real-time polymerase chain reaction (PCR) using fungal DNA mixtures and DNA extracted from fungal experimental communities as templates. T. cf. harzianum was detectable even when as few as 100 copies of the SCAR marker were available or even when its population represented only 0.1% of the whole community.
Vitreoscilla hemoglobin promotes Salecan production by Agrobacterium sp. ZX09
Yun-mei Chen, Hai-yang Xu, Yang Wang, Jian-fa Zhang, Shi-ming Wang
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2014, 15(11): 979-985.   https://doi.org/10.1631/jzus.B1400123
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Salecan is a novel exopolysaccharide produced by the strain Agrobacterium sp. ZX09, and it is composed of only glucose monomers. The unique chemical composition and excellent physicochemical properties make Salecan a promising material for applications in coagulation, lubrication, protection against acute liver injury, and alleviating constipation. In this study, we cloned the Vitreoscilla hemoglobin gene into a broad-host-range plasmid pCM158. Without antibiotic selection, there was negligible loss of the plasmid in the host Agrobacterium sp. ZX09 after one passage of cultivation. The expression of Vitreoscilla hemoglobin was demonstrated by carbon monoxide (CO) difference spectrum. The engineered strain Agrobacterium sp. ZX09 increased Salecan yield by 30%. The other physiological changes included its elevated respiration rate and cellular invertase activity.
Positional variation in grain mineral nutrients within a rice panicle and its relation to phytic acid concentration
Da Su, Faisal Sultan, Ning-chun Zhao, Bing-ting Lei, Fu-biao Wang, Gang Pan, Fang-min Cheng
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2014, 15(11): 986-996.   https://doi.org/10.1631/jzus.B1400157
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Six japonica rice genotypes, differing in panicle type, grain density, and phytic acid (PA) content, were applied to investigate the effect of grain position on the concentrations of major mineral nutrients and its relation to PA content and grain weight within a panicle. Grain position significantly affected the concentrations of the studied minerals in both the vertical and horizontal axes of a rice panicle. Heavy-weight grains, located on primary rachis and top rachis, generally had higher mineral concentrations, but were lower in PA concentration and molar ratios of PA/Zn, compared with the small-weight grains located on secondary rachis and bottom rachis, regardless of rice genotypes. However, on the basis of six rice genotypes, no significant correlations were found among mineral elements, PA, and grain weight. These results suggested that some desired minerals, like Zn and Fe, and their bioavailability, can be enhanced simultaneously by the modification of panicle patterns, and it will be helpful in the selection of rice genotypes with low PA and high mineral nutrients for further breeding strategy without sacrificing their high yields.
Development of 107 SSR markers from whole genome shotgun sequences of Chinese bayberry (Myrica rubra) and their application in seedling identification
Hui-min Jia, Yu-tong Shen, Yun Jiao, Guo-yun Wang, Xiao Dong, Hui-juan Jia, Fang Du, Sen-miao Liang, Chao-chao Zhou, Wei-hua Mao, Zhong-shan Gao
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2014, 15(11): 997-1005.   https://doi.org/10.1631/jzus.B1400051
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Chinese bayberry (Myrica rubra Sieb. et Zucc.) is one of the important subtropical fruit crops native to the South of China and Asian countries. In this study, 107 novel simple sequence repeat (SSR) molecular markers, a powerful tool for genetic diversity studies, cultivar identification, and linkage map construction, were developed and characterized from whole genome shotgun sequences. M13 tailing for forward primers was applied as a simple method in different situations. In total, 828 alleles across 45 accessions were detected, with an average of 8 alleles per locus. The number of effective alleles ranged from 1.22 to 10.41 with an average of 4.08. The polymorphic information content (PIC) varied from 0.13 to 0.89, with an average of 0.63. Moreover, these markers could also be amplified in their related species Myrica cerifera (syn. Morella cerifera) and Myrica adenophora. Seventy-eight SSR markers can be used to produce a genetic map of a cross between 鈥楤iqi鈥?and 鈥楧ongkui鈥? A neighbor-joining (NJ) tree was constructed to assess the genetic relationships among accessions, and the elite accessions 鈥榊2010-70鈥? 鈥榊2012-140鈥? and 鈥榊2012-145鈥? were characterized as potential new genotypes for cultivation.
A mutation of Aspergillus niger for hyper-production of citric acid from corn meal hydrolysate in a bioreactor
Wei Hu, Jing Liu, Ji-hong Chen, Shu-yang Wang, Dong Lu, Qing-hua Wu, Wen-jian Li
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2014, 15(11): 1006-1010.   https://doi.org/10.1631/jzus.B1400132
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The properties of the screened mutants for hyper-production of citric acid induced by carbon (12C6+) ion beams and X-ray irradiation were investigated in our current study. Among these mutants, mutant H4002 screened from 12C6+ ion irradiation had a higher yield of citric acid production than the parental strain in a 250-ml shaking flash. These expanded submerged experiments in a bioreactor were also carried out for mutant H4002. The results showed that (177.7–196.0) g/L citric acid was accumulated by H4002 through exploiting corn meal hydrolysate (containing initial 200.0–235.7 g/L sugar) with the productivity of (2.96–3.27) g/(L∙h). This was especially true when the initial sugar concentration was 210 g/L, and the best economical citric acid production reached (187.5±0.7) g/L with a productivity of 3.13 g/(L∙h). It was observed that mutant H4002 can utilize low-cost corn meal as a feedstock to efficiently produce citric acid. These results imply that the H4002 strain has the industrial production potentiality for citric acid and offers strong competition for the citric acid industry.
Erratum
Erratum to: Identification of a novel mutation in a Chinese family with Nance-Horan syndrome by whole exome sequencing
Nan Hong, Yan-hua Chen, Chen Xie, Bai-sheng Xu, Hui Huang, Xin Li, Yue-qing Yang, Ying-ping Huang, Jian-lian Deng, Ming Qi, Yang-shun Gu
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2014, 15(11): 1011-1011.   https://doi.org/10.1631/jzus.B13e0321
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The original version of this article unfortunately contained a mistake. In the authors 鈥淣an HONG搂1, Yan-hua CHEN搂1, Chen XIE1, Bai-sheng XU1, Hui HUANG2, Xin LI2, Yue-qing YANG2, Ying-ping HUANG2, Jian-lian DENG2, Ming QI鈥犫€?,3,4, Yang-shun GU鈥犫€?鈥? the superscript sequence number 鈥?鈥? which marked the affiliation of 鈥淵an-hua CHEN鈥? was incorrect. The correct version should be 鈥淣an HONG搂1, Yan-hua CHEN搂2, Chen XIE1, Bai-sheng XU1, Hui HUANG2, Xin LI2, Yue-qing YANG2, Ying-ping HUANG2, Jian-lian DENG2, Ming QI鈥犫€?,3,4, Yang-shun GU鈥犫€?鈥?
Retraction Note
Retraction Note to: Characterization of cancer stem-like cells in the side population cells of human gastric cancer cell line MKN-45
Hai-hong Zhang, Ai-zhen Cai, Xue-ming Wei, Li Ding, Feng-zhi Li, Ai-ming Zheng, Da-jiang Dai, Rong-rong Huang, Hou-jun Cao, Hai-yang Zhou, Jian-mei Wang, Xue-jing Wang, Wei Shi, Heng Zhu, Xiao-ying Yuan, Lin Chen
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2014, 15(11): 1012-1012.   https://doi.org/10.1631/jzus.B12r0102
Abstract   PDF (0KB)
This article has been retracted at the authors鈥?request, as it contains large portions of text and fig-ures that have been previously published in the following article: Zhang, H., Xi, H., Cai, A., Xia, Q., Wang, X.X., Lu, C., Zhang, Y., Song, Z., Wang, H., Li, Q., Chen, L., Guo, Z., 2013. Not all side population cells contain cancer stem-like cells in human gastric cancer cell lines. Dig. Dis. Sci., 58(1):132-139. [doi:10.1007/s10620-012-2330-1].
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