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Biotechonolgoy
Bed expansion behavior and sensitivity analysis for super-high-rate anaerobic bioreactor
Xiao-guang CHEN, Ping ZHENG, Jing CAI, Mahmood QAISAR
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(2): 79-86.   https://doi.org/10.1631/jzus.B0900256
Abstract( 2331 )     PDF(0KB)( 1391 )
Bed expansion behavior and sensitivity analysis for super-high-rate anaerobic bioreactor (SAB) were performed based on bed expansion ratio (E), maximum bed sludge content (Vpmax), and maximum bed contact time between sludge and liquid (τmax). Bed expansion behavior models were established under bed unfluidization, fluidization, and transportation states. Under unfluidization state, E was 0, Vpmax was 4 867 ml, and τmax was 844–3 800 s. Under fluidization state, E, Vpmax, and τmax were 5.28%–255.69%, 1 368–4 559 ml, and 104–732 s, respectively. Under transportation state, washout of granular sludge occurred and destabilized the SAB. During stable running of SAB under fluidization state, E correlated positively with superficial gas and liquid velocities (ug and ul), while Vpmax and τmax correlated negatively. For E and Vpmax, the sensitivities of ug and ul were close to each other, while for τmax, the sensitivity of ul was greater than that of ug. The prediction from these models was a close match to the experimental data.
Electricity generation and brewery wastewater treatment from sequential anode-cathode microbial fuel cell
Qing WEN, Ying WU, Li-xin ZHAO, Qian SUN, Fan-ying KONG
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(2): 87-93.   https://doi.org/10.1631/jzus.B0900272
Abstract( 2943 )     PDF(0KB)( 1968 )
A sequential anode-cathode double-chamber microbial fuel cell (MFC), in which the effluent of anode chamber was used as a continuous feed for an aerated cathode chamber, was constructed in this experiment to investigate the performance of brewery wastewater treatment in conjugation with electricity generation. Carbon fiber was used as anode and plain carbon felt with biofilm as cathode. When hydraulic retention time (HRT) was 14.7 h, a relatively high chemical oxygen demand (COD) removal efficiency of 91.7%–95.7% was achieved under long-term stable operation. The MFC displayed an open circuit voltage of 0.434 V and a maximum power density of 830 mW/m3 at an external resistance of 300 Ω. To estimate the electrochemical performance of the MFC, electrochemical measurements were carried out and showed that polarization resistance of anode was the major limiting factor in the MFC. Since a high COD removal efficiency was achieved, we conclude that the sequential anode-cathode MFC constructed with bio-cathode in this experiment could provide a new approach for brewery wastewater treatment.
A facile synthesis of 2-aryloxypyrimidine derivatives via a tandem reductive amination/intermolecular SNAr sequence
Hai-feng WU, Pei-zhi ZHANG, Jun WU
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(2): 94-101.   https://doi.org/10.1631/jzus.B0900293
Abstract( 2459 )     PDF(0KB)( 1492 )
A novel tandem reductive amination/intermolecular nucleophilic aromatic substitution (SNAr) sequence has been established for the synthesis of amine containing pyrimidine in formation of one carbon-oxygen and one carbon-nitrogen bonds in a one-pot fashion. Treatment of aldehyde with arylamine, 2-methanesulfonyl-4,6-dimethoxypyrimidine and sodium borohydride provides good overall yield. The p-toluenesulfonic acid (PTSA) can be used as activator and is generally needed in the reaction. Dioxane is the preferred reaction solvent, but reactions can also be carried out in tetrahydrofuran (THF), MeCN, toluene and dichloromethane. The procedure is carried out effectively in the presence of K2CO3. The reaction proceeds smoothly with aromatic aldehydes and arylamines possessing electron-donating or -withdrawing groups. This method can be applied to the synthesis of the oilseed rape herbicide and is superior to the classical one in several aspects: cutting out several purification steps, minimizing solvent use and chemical waste, and saving time. Its advantages such as operational convenience, high-efficient synthesis, and starting material availability make it a desirable method for preparing amines with molecular diversity and biological activity.
Sodium tetrachloroaurate(III) dihydrate-catalyzed efficient synthesis of 1,5-benzodiazepine and quinoxaline derivatives
Ren-xin SHI, Yun-kui LIU, Zhen-yuan XU
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(2): 102-108.   https://doi.org/10.1631/jzus.B0900288
Abstract( 2744 )     PDF(0KB)( 1813 )
Both 1,5-benzodiazepine and quinoxaline derivatives are important heterocycles in pharmaceuticals. We describe an efficient and clean method for the synthesis of 1,5-benzodiazepines from o-phenylenediamine and ketones catalyzed by sodium tetrachloroaurate(III) dihydrate under mild conditions. The catalyst was shown to be equally effective for the synthesis of quinoxalines from o-phenylenediamine and α-bromo ketones under the similar reaction conditions. This method produced good yields.
Molecular characterization and infectivity of Papaya leaf curl China virus infecting tomato in China
Hui ZHANG, Xin-ying MA, Ya-juan QIAN, Xue-ping ZHOU
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(2): 109-114.   https://doi.org/10.1631/jzus.B0900176
Abstract( 2747 )     PDF(0KB)( 1462 )
Papaya leaf curl China virus (PaLCuCNV) was previously reported as a distinct begomovirus infecting papaya in southern China. Based on molecular diagnostic survey, 13 PaLCuCNV isolates were obtained from tomato plants showing leaf curl symptoms in Henan and Guangxi Provinces of China. Complete nucleotide sequences of 5 representative isolates (AJ558116, AJ558117, AJ704604, FN256260, and FN297834) were determined to be 2738–2751 nucleotides, which share 91.7%–97.9% sequence identities with PaLCuCNV isolate G2 (AJ558123). DNA-β was not found to be associated with PaLCuCNV isolates. To investigate the infectivity of PaLCuCNV, an infectious clone of PaLCuCNV-[CN:HeNZM1] was constructed and agro-inoculated into Nicotiana benthamiana, N. tabacum Samsun, N. glutinosa, Solanum lycopersicum and Petunia hybrida plants, which induced severe leaf curling and crinkling symptoms in these plants. Southern blot analysis and polymerase chain reaction (PCR) indicated a systemic infection of test plants by the agro-infectious clone.
A biologically inspired model for pattern recognition
Eduardo GONZALEZ, Hans LILJENSTRÖM, Yusely RUIZ, Guang LI
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(2): 115-126.   https://doi.org/10.1631/jzus.B0910427
Abstract( 3074 )     PDF(0KB)( 1547 )
In this paper, a novel bionic model and its performance in pattern recognition are presented and discussed. The model is constructed from a bulb model and a three-layered cortical model, mimicking the main features of the olfactory system. The olfactory bulb and cortex models are connected by feedforward and feedback fibers with distributed delays. The Breast Cancer Wisconsin dataset consisting of data from 683 patients divided into benign and malignant classes is used to demonstrate the capacity of the model to learn and recognize patterns, even when these are deformed versions of the originally learned patterns. The performance of the novel model was compared with three artificial neural networks (ANNs), a back-propagation network, a support vector machine classifier, and a radial basis function classifier. All the ANNs and the olfactory bionic model were tested in a benchmark study of a standard dataset. Experimental results show that the bionic olfactory system model can learn and classify patterns based on a small training set and a few learning trials to reflect biological intelligence to some extent.
Biomedicine
Distributions of HLA-A and -B alleles and haplotypes in the Yi ethnic minority of Yunnan, China: relationship to other populations
Bo-feng ZHU, Guang YANG, Chun-mei SHEN, Hai-xia QIN, Shun-zhi LIU, Ya-jun DENG, Shuan-liang FAN, Li-bin DENG, Feng CHEN, Ping ZHANG, Jie FANG, Li-ping CHEN, Hong-dan WANG, Zhen-yuan WANG, Rudolf LUCAS
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(2): 127-135.   https://doi.org/10.1631/jzus.B0900232
Abstract( 4078 )     PDF(0KB)( 2464 )
Objective: To investigate the distributions of human leukocyte antigen (HLA)-A and -B alleles and HLA-A-B haplotypes in the Yi ethnic minority of the Yunnan Province, situated in southwestern China. Methods: DNA typing for HLA-A and -B loci was performed using the polymerase chain reaction-sequence-based typing (PCR-SBT) method on 114 randomly selected healthy individuals of the Yi population. The allelic frequencies of HLA-A and -B loci were calculated by direct counting and HLA-A-B haplotypes were estimated using the expectation maximization algorithm. Results: A total of 17 HLA-A and 38 HLA-B alleles were found in the Yi population. The most frequent alleles were A*2402 (32.46%), A*1101 (26.32%), and A*0203 (10.09%) at the HLA-A locus and B*4601 (12.28%), B*1525 (10.09%), B*4001 (8.77%), and B*3802 (7.89%) at the HLA-B locus. The predominant HLA-A-B haplotypes were A*2402-B*1525 (7.86%) and A*0203-B*3802 (5.64%), followed by A*1101-B*4001 (4.69%). Phylogenetic analysis indicates that the Yi population in the Honghe, Yunnan Province of China basically belongs to groups of southeastern Asian origin, but shares some characteristics with northeastern Asian groups. Conclusion: The present study may add to the understanding of HLA polymorphism in the Yi ethnic group that was poorly defined previously, and provide useful information for bone marrow transplantation, anthropological research, and forensic sciences as well as for disease-association studies.
Nicotinamide N-methyltransferase protein expression in renal cell cancer
Jun ZHANG, Xin-you XIE, Su-wen YANG, Jin WANG, Chao HE
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(2): 136-143.   https://doi.org/10.1631/jzus.B0900249
Abstract( 2971 )     PDF(0KB)( 1518 )
Objective: To understand the function of nicotinamide N-methyltransferase (NNMT) protein as tumor biomarker in renal carcinoma. Methods: Recombinant NNMT protein was used to prepare monoclonal antibodies by hybridoma technique. The diagnostic and prognostic function of NNMT protein in renal carcinoma was evaluated by analyzing 74 renal cancer tissues through immunohistochemical staining for NNMT by using the prepared antibodies. Results: Two hybridomas named 2F8 and 1E7 stably secreting the monoclonal antibodies were isolated successfully, and characters such as isotypes and specificity were determined. NNMT protein was significantly up-regulated in renal cancer and significantly associated with tumor histology and ages. The univariate survival analysis demonstrated that the pT-status, high levels of NNMT, and distant metastasis were significant prognosticators. Conclusion: NNMT is over-expressed in a large proportion in renal cell cancers. High NNMT expression is significantly associated with unfavorable prognosis. However, the prognostic value of NNMT needs further verification in larger sample sizes.
Quantitative profiles of the mRNAs of ER-α and its novel variant ER-α36 in breast cancers and matched normal tissues
Yi ZHENG, Jing ZHANG, Zhen-zhen XU,Jian-ming SHENG, Xiao-chen ZHANG, Hao-hao WANG, Xiao-dong TENG, Xiao-jiao LIU, Jiang CAO, Li-song TENG
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(2): 144-150.   https://doi.org/10.1631/jzus.B0900266
Abstract( 3188 )     PDF(0KB)( 1341 )
Objective: The novel estrogen receptor-α (ER-α) variant ER-α36 is reported to be functional in the estrogen signaling pathway and is related to tamoxifen resistance in breast cancer. However, ER-α36 tends to be a favorable factor for survival in patients without tamoxifen therapy. To investigate the mechanisms behind this paradox, we determined the differences between the transcriptional profiles of ER-α36 and full-length ER-α (ER-α66) in breast cancers and matched normal tissues. Methods: We analyzed ER-α36 and ER-α66 messenger RNA (mRNA) levels in 74 pairs of breast cancers and matched normal tissues using a real-time quantitative polymerase chain reaction (PCR) assay, and correlated the results with their clinicopathological characteristics. Results: Breast cancers expressed lower ER-α36 mRNA levels than matched normal tissues regardless of their ER-α66 expression status. Down-regulation of ER-α36 mRNA was correlated with local progression, lymph node metastasis, and advanced cancer stage. The level of ER-α66 mRNA was lower in ER-α negative breast cancers compared with matched normal tissues. No differences in ER-α66 mRNA levels were observed during cancer progression. Conclusion: Down-regulation of ER-α36 is associated with carcinogenesis and progression of breast cancer.
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