Please wait a minute...
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology)  2005, Vol. 6 Issue ( 2): 3-    DOI: 10.1631/jzus.2005.B0087
    
Two ancient rounds of polyploidy in rice genome
ZHANG Yang, XU Guo-hua, GUO Xing-yi, FAN Long-jiang
Institute of Bioinformatics/ZJU-IBM Biocomputational Lab, Zhejiang University, Hangzhou 310029, China; Institute of Crop Science, Zhejiang University, Hangzhou 310029, China
Download:     PDF (0 KB)     
Export: BibTeX | EndNote (RIS)      

Abstract  An ancient genome duplication (PPP1) that predates divergence of the cereals has recently been recognized. We report here another potentially older large-scale duplication (PPP2) event that predates monocot-dicot divergence in the genome of rice (Oryza sativa L.), as inferred from the age distribution of pairs of duplicate genes based on recent genome data for rice. Our results suggest that paleopolyploidy was widespread and played an important role in the evolution of rice.

Key wordsBioinformatics Biocomputational Crop Oryza sativa      Polyploidy      Genome evolution      Age distribution of duplicate genes      Monocot-dicot divergence     
Received: 27 October 2004     
CLC:  Q78  
Cite this article:

ZHANG Yang, XU Guo-hua, GUO Xing-yi, FAN Long-jiang. Two ancient rounds of polyploidy in rice genome. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2005, 6( 2): 3-.

URL:

http://www.zjujournals.com/xueshu/zjus-b/10.1631/jzus.2005.B0087     OR     http://www.zjujournals.com/xueshu/zjus-b/Y2005/V6/I 2/3

[1] Quan-sheng Du, Jie Cui, Chun-jie Zhang, Ke He. Visualization analysis of CRISPR/Cas9 gene editing technology studies[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2016, 17(10): 798-806.
[2] Zheng Zhu, Jiong Gao, Jin-xiao Yang, Xiao-yan Wang, Guo-dong Ren, Yu-long Ding, Ben-ke Kuai. Synthetic promoters consisting of defined cis-acting elements link multiple signaling pathways to probenazole-inducible system[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2015, 16(4): 253-263.
[3] Gabriel Pérez, Valentina Verdejo, Clarissa Gondim-Porto, Julieta Orlando, Margarita Carú. Designing a SCAR molecular marker for monitoring Trichoderma cf. harzianum in experimental communities[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2014, 15(11): 966-978.
[4] Ya Wang, Meng-yun Xu, Jian-ping Liu, Mu-gui Wang, Hai-qing Yin, Ju-min Tu. Molecular identification and interaction assay of the gene (OsUbc13) encoding a ubiquitin-conjugating enzyme in rice[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2014, 15(7): 624-637.
[5] Zhen Dai, Rong Wu, Yi-cheng Zhao, Kan-kan Wang, Yong-ye Huang, Xin Yang, Zi-cong Xie, Chang-chun Tu, Hong-sheng Ouyang, Tie-dong Wang, Da-xin Pang. Early lethality of shRNA-transgenic pigs due to saturation of microRNA pathways[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2014, 15(5): 466-473.
[6] Wei Wang, Cai-yan Li, Chu-tian Ge, Lei Lei, You-ling Gao, Guo-ying Qian. De-novo characterization of the soft-shelled turtle Pelodiscus sinensis transcriptome using Illumina RNA-Seq technology*#[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2013, 14(1): 58-67.
[7] Zhang-yue Song, Jing-luan Tian, Wei-zhe Fu, Lin Li, Ling-hong Lu, Lian Zhou, Zhi-hui Shan, Gui-xiang Tang, Hui-xia Shou. Screening Chinese soybean genotypes for Agrobacterium-mediated genetic transformation suitability[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2013, 14(4): 289-298.
[8] Chen Gao, Yibin Wang. Global impact of RNA splicing on transcriptome remodeling in the heart[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2012, 13(8): 603-608.
[9] Lin Cheng, Rong-rong Sun, Fei-yan Wang, Zhen Peng, Fu-ling Kong, Jian Wu, Jia-shu Cao, Gang Lu. Spermidine affects the transcriptome responses to high temperature stress in ripening tomato fruit[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2012, 13(4): 283-297.
[10] Hiroshi Nakashima, Yuka Kuroda. Differences in dinucleotide frequencies of thermophilic genes encoding water soluble and membrane proteins[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2011, 12(6): 419-427.
[11] Hai-lan Liu, Jun Zhu. Analysis of the 3′ ends of tRNA as the cause of insertion sites of foreign DNA in Prochlorococcus[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(9): 708-718.
[12] Na Wang, Cai-ying Jiang, Ming-xing Jiang, Chuan-xi Zhang, Jia-an Cheng. Using chimeric piggyBac transposase to achieve directed interplasmid transposition in silkworm Bombyx mori and fruit fly Drosophila cells[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(9): 728-734.
[13] Li-rong Shen, Mei-hui Ding, Li-wen Zhang, Wei-guang Zhang, Liang Liu, Duo Li. Expression of a bee venom phospholipase A2 from Apis cerana cerana in the baculovirus-insect cell[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(5): 342-349.
[14] Ming LIU, Jun YANG, Yun-qing CHENG, Li-jia AN. Optimization of soybean (Glycine max (L.) Merrill) in planta ovary transformation using a linear minimal gus gene cassette[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2009, 10(12): 870-876.
[15] Tong-bao LIU, Guo-qing CHEN, Hang MIN, Fu-cheng LIN. MoFLP1, encoding a novel fungal fasciclin-like protein, is involved in conidiation and pathogenicity in Magnaporthe oryzae[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2009, 10(6): 434-444.