Objective: To investigate the disease burden of congenital heart disease (CHD) in China from 1990 to 2019. Methods: Using the data from Global Burden of Disease (GBD) study 2019, the incidence, age-standardized incidence rates, the mortality, age-standardized mortality rates, disability-adjusted life year (DALY) and age-standardized DALY rates of CHD were calculated. Time trend analysis of disease burden-related indicators was analyzed by Joinpoint regression model. Age-period-cohort model was used to describe age, period, and birth cohort effects in CHD mortality population. The relationship between age-standardized incidence, mortality, DALY rates of congenital heart disease and human development index (HDI) were analyzed by Pearson correlation. Results: From 1990 to 2019, the mean annual percentage change (AAPC) in age-standardized incidence rate, mortality rate and DALY rate of CHD in China were –0.1%(95%CI: –0.7%-0.4%)、–3.5%(95%CI: –3.7%-–3.2%) and -3.5%(95%CI: –3.7%-–3.2%), respectively. CHD usually occurred in the first year of life. The mean incidence rate at birth was 2497.9/100 000, and the mean incidence rate under 1?year of age was 2626.6/100 000. During the period of 1995—2000, the incidence rate in newborn and <1?year children showed an exponential upward trend, then it remained a steady downward trend. However, there was an exponential increase in <1?year children during 2010—2013 and 2014—2015, followed by an exponential decrease to the lowest value in the last three decades. The mortality of CHD tended to decrease with age, with mortality of 101.67/100 000 for children under 5?years of age and a decrease after 5?years of age. However, there was a transient increase in mortality in age group 55-<60. From 1995 to 2019, the relative risk of death of patients with CHD showed a downward trend. Compared with 1995—1999, the rate ratio of death decreased by 24% in 2015—2019. Such downward trend was also observed in the birth cohort after 1945. Compared with the 1945—1949 birth cohort, the rate ratio of death for patients with CHD decreased by 75% in the 2015—2019 birth cohort. When HDI<0.58 (before 1999), the age-standardized incidence of CHD was positively correlated with HDI ( r=0.74, P<0.05). When HDI≥0.58 (after 1999), the age-standardized incidence of CHD was negatively correlated with HDI (r=–0.76, P<0.01). The age-standardized mortality and DALY rates were negatively correlated with HDI (r=–0.95 and –0.93, both P<0.01).Conclusions: During 1990 to 1999, the incidence of CHD increases and is positively correlated with the social development. During 1999 to 2019, the incidence of CHD decreases and is negatively correlated with the social development. The disease burden of CHD decreases and is negatively correlated with the social development. Some progress has been made in the field of prevention and control of CHD, but the disease burden remains high among younger population in China.