Please wait a minute...
ZJUS-B
Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology)  2016, Vol. 17 Issue (10): 763-774    DOI: 10.1631/jzus.B1500277
Articles     
A genome-wide analysis of the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) gene family in barley (Hordeum vulgare L.)
Bao-jian Guo, Jun Wang, Shen Lin, Zheng Tian, Kai Zhou, Hai-ye Luan, Chao Lyu, Xin-zhong Zhang, Ru-gen Xu
Jiangsu Key Laboratory of Crop Genetics and Physiology / Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China; Lianyungang Agricultural Science, Lianyungang 222006, China
Download:     PDF (0 KB)     
Export: BibTeX | EndNote (RIS)      

Abstract  ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) genes are a family of plant specific transcription factors, which play an important role in the regulation of plant lateral organ development and metabolism. However, a genome-wide analysis of the AS2/LOB gene family is still not available for barley. In the present study, 24 AS2-like (ASL)/LOB domain (LBD) genes were identified based on the barley (Hordeum vulgare L.) genome sequence. A phylogenetic tree of ASL/LBD proteins from barley, Arabidopsis, maize, and rice was constructed. The ASL/LBD genes were classified into two classes, class I and class II, which were divided into five and two subgroups, respectively. Genes homologous in barley and Arabidopsis were analyzed. In addition, the structure and chromosomal locations of the genes were analyzed. Expression profiles indicated that barley HvASL/LBD genes exhibit a variety of expression patterns, suggesting that they are involved in various aspects of physiological and developmental processes. This genome-wide analysis of the barley AS2/LOB gene family contributes to our understanding of the functions of the AS2/LOB gene family.

Key words： Barley      AS2/LOB gene family      Phylogenetic tree      Expression pattern     
Received: 11 November 2015      Published: 02 October 2016
CLC:  S512.3  
Service
E-mail this article
Add to my bookshelf
Add to citation manager
E-mail Alert
RSS
Articles by authors
Bao-jian Guo
Ru-gen Xu
Jun Wang
Shen Lin
Zheng Tian
Kai Zhou
Hai-ye Luan
Chao Lyu
Xin-zhong Zhang
Cite this article:

Bao-jian Guo, Jun Wang, Shen Lin, Zheng Tian, Kai Zhou, Hai-ye Luan, Chao Lyu, Xin-zhong Zhang, Ru-gen Xu. A genome-wide analysis of the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) gene family in barley (Hordeum vulgare L.). Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2016, 17(10): 763-774.

URL:

http://www.zjujournals.com/xueshu/zjus-b/10.1631/jzus.B1500277     OR     http://www.zjujournals.com/xueshu/zjus-b/Y2016/V17/I10/763

[1] Hai-ping Lu, Wei-qin Pang, Wen-xu Li, Yuan-yuan Tan, Qing Wang, Hai-Jun Zhao, Qing-Yao Shu. Tissue-specific expression, developmentally and spatially regulated alternative splicing, and protein subcellular localization of OsLpa rice[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2016, 17(2): 100-109.
[2] Hai-tao Zhang, Tian-long Chen, Bing-lin Zhang, De-zhi Wu, Ye-chang Huang, Fei-bo Wu, Guo-ping Zhang. Variation in β-amylase activity and thermostability in Tibetan annual wild and cultivated barley genotypes[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2014, 15(9): 801-808.
[3] Ya-e Zhao, Jun-xian Ma, Li Hu, Li-ping Wu, Manuel De Rojas. Discrimination between Demodex folliculorum (Acari: Demodicidae) isolates from China and Spain based on mitochondrial cox1 sequences[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2013, 14(9): 829-836.
[4] Yong Han, Xiao-li Jin, Fei-bo Wu, Guo-ping Zhang. Genotypic differences in callus induction and plant regeneration from mature embryos of barley (Hordeum vulgare L.)[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2011, 12(5): 399-407.
[5] Da-wei Xue, Mei-xue Zhou, Xiao-qin Zhang, Song Chen, Kang Wei, Fan-rong Zeng, Ying Mao, Fei-bo Wu, Guo-ping Zhang. Identification of QTLs for yield and yield components of barley under different growth conditions[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(3): 169-176.
[6] Yu-qin Mei, Song-quan Song. Response to temperature stress of reactive oxygen species scavenging enzymes in the cross-tolerance of barley seed germination[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(12): 965-972.
[7] Qiao-yun Li, Hong-bin Niu, Jun Yin, Hong-bo Shao, Ji-shan Niu, Jiang-ping Ren, Yong-chun Li, Xiang Wang. Transgenic barley with overexpressed PTrx increases aluminum resistance in roots during germination[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(11): 862-870.
[8] Jun-mei Wang, Jian-ming Yang, Jing-huan Zhu, Qiao-jun Jia, Yue-zhi Tao. Assessment of genetic diversity by simple sequence repeat markers among forty elite varieties in the germplasm for malting barley breeding[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2010, 11(10): 792-800.
[9] Kang WEI, Da-wei XUE, You-zong HUANG, Xiao-li JIN, Fei-bo WU, Guo-ping ZHANG. Genetic mapping of quantitative trait loci associated with β-amylase and limit dextrinase activities and β-glucan and protein fraction contents in barley[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2009, 10(11): 839-846.
[10] Da-wei XUE, Ming-can CHEN, Mei-xue ZHOU, Song CHEN, Ying MAO, Guo-ping ZHANG. QTL analysis of flag leaf in barley (Hordeum vulgare L.) for morphological traits and chlorophyll content[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2008, 9(12): 938-943.
[11] WU Gen-fu, LIU Xiao-hua. Characterization of predominant bacteria isolates from clean rooms in a pharmaceutical production unit[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2007, 8(9): 666-672.
[12] HUANG You-zong, WEI Kang, YANG Juan, DAI Fei, ZHANG Guo-ping. Interaction of salinity and cadmium stresses on mineral nutrients, sodium, and cadmium accumulation in four barley genotypes[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2007, 8(7): 476-485.
[13] ZOU Yang-yun, YANG Jian, ZHU Jun. A robust statistical procedure to discover expression biomarkers using microarray genomic expression data[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2006, 7(8 ): 1-.
[14] Wang Xu-dong, Yang Juan, Zhang Guo-ping. Genotypic and environmental variation in barley limit dextrinase activity and its relation to malt quality[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2006, 7(5 ): 8-.
[15] WANG Jun-ping, RAMAN Harsh, ZHANG Guo-ping, MENDHAM Neville, ZHOU Mei-xue. Aluminium tolerance in barley (Hordeum vulgare L.): physiological mechanisms, genetics and screening methods[J]. Journal of Zhejiang University-SCIENCE B (Biomedicine & Biotechnology), 2006, 7(10): 1-.